{
  "_id": "6a1eae80b25058d4daada86b",
  "Package": "PressPurt",
  "Title": "Indeterminacy of Networks via Press Perturbations",
  "Version": "1.0.2",
  "Authors@R": "c(person(given = \"David\",\nfamily = \"Koslicki\",\nrole = c(\"aut\", \"cre\"),\nemail = \"dmk333@psu.edu\"),\nperson(given = \"Dana\",\nfamily = \"Gibbon\",\nrole = c(\"aut\", \"trl\")),\nperson(given = \"Mark\",\nfamily = \"Novak\",\nrole = \"aut\"))",
  "Description": "This is a computational package designed to identify the\nmost sensitive interactions within a network which must be\nestimated most accurately in order to produce qualitatively\nrobust predictions to a press perturbation. This is\naccomplished by enumerating the number of sign switches (and\ntheir magnitude) in the net effects matrix when an edge\nexperiences uncertainty. The package produces data and\nvisualizations when uncertainty is associated to one or more\nedges in the network and according to a variety of\ndistributions. The software requires the network to be\ndescribed by a system of differential equations but only\nrequires as input a numerical Jacobian matrix evaluated at an\nequilibrium point. This package is based on Koslicki, D., &\nNovak, M. (2017) <doi:10.1007/s00285-017-1163-0>.",
  "URL": "https://github.com/dkoslicki/PressPurt",
  "BugReports": "https://github.com/dkoslicki/PressPurt/issues",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.0",
  "VignetteBuilder": "R.rsp",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-02 10:17:40 UTC",
    "User": "root"
  },
  "Author": "David Koslicki [aut, cre], Dana Gibbon [aut, trl], Mark Novak\n[aut]",
  "Maintainer": "David Koslicki <dmk333@psu.edu>",
  "Config/pak/sysreqs": "libpng-dev python3",
  "Repository": "https://rtxci.r-universe.dev",
  "Date/Publication": "2020-10-19 21:10:13 UTC",
  "RemoteUrl": "https://github.com/cran/PressPurt",
  "RemoteRef": "HEAD",
  "RemoteSha": "f549fef186db27d9887caec4a4b20df1556073ee",
  "MD5sum": "8e9d484ee1318c985a67064532792ba3",
  "_user": "rtxci",
  "_type": "src",
  "_file": "PressPurt_1.0.2.tar.gz",
  "_fileid": "0a6eecfc03a35141f2ba787b5aa1d4663178ef33f88c26552b7205131043bded",
  "_filesize": 311353,
  "_sha256": "0a6eecfc03a35141f2ba787b5aa1d4663178ef33f88c26552b7205131043bded",
  "_created": "2026-06-02T10:17:40.000Z",
  "_published": "2026-06-02T10:20:48.322Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79049007072,
      "time": 154,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7355062136"
    },
    {
      "job": 79049007022,
      "time": 133,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355055127"
    },
    {
      "job": 79049007108,
      "time": 144,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7355050797"
    },
    {
      "job": 79049007018,
      "time": 151,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355050255"
    },
    {
      "job": 79048537115,
      "time": 170,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355009483"
    },
    {
      "job": 79049007093,
      "time": 112,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355048062"
    },
    {
      "job": 79049007056,
      "time": 118,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7355049883"
    },
    {
      "job": 79049006996,
      "time": 99,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7355043790"
    },
    {
      "job": 79049007071,
      "time": 99,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355043614"
    }
  ],
  "_buildurl": "https://github.com/r-universe/rtxci/actions/runs/26813257576",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/PressPurt",
  "_commit": {
    "id": "f549fef186db27d9887caec4a4b20df1556073ee",
    "author": "David Koslicki <dmk333@psu.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.2\n",
    "time": 1603141813
  },
  "_maintainer": {
    "name": "David Koslicki",
    "email": "dmk333@psu.edu",
    "login": "rtxci",
    "description": "",
    "uuid": 81720713
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "grid",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "role": "Imports"
    },
    {
      "package": "reticulate",
      "version": ">= 1.11",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "R.rsp",
      "role": "Suggests"
    },
    {
      "package": "qpdf",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "rtxci",
      "count": 1,
      "uuid": 81720713
    }
  ],
  "_userbio": {
    "uuid": 81720713,
    "type": "user",
    "name": "rtxci"
  },
  "_downloads": {
    "count": 115,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PressPurt"
  },
  "_devurl": "https://github.com/dkoslicki/presspurt",
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/PressPurt.html",
    "manual.pdf"
  ],
  "_realowner": "rtxci",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.2",
      "date": "2020-10-19"
    }
  ],
  "_exports": [
    "ComputeEntryWisePerturbationExpectation",
    "ComputeMultiEntryPerturbationExpectation",
    "create_conda_env",
    "create_virtual_env",
    "find_python",
    "GenerateEntryWiseFigures",
    "get_distributions_single",
    "ns_to_step",
    "PreprocessMatrix",
    "process_data",
    "py_depend",
    "set_python_conda",
    "set_python_virtual"
  ],
  "_help": [
    {
      "page": "ComputeEntryWisePerturbationExpectation",
      "title": "Compute Entry Wise Perturbation Expectation",
      "topics": [
        "ComputeEntryWisePerturbationExpectation"
      ]
    },
    {
      "page": "ComputeMultiEntryPerturbationExpectation",
      "title": "Compute Multi Entry Perturbation Expectation",
      "topics": [
        "ComputeMultiEntryPerturbationExpectation"
      ]
    },
    {
      "page": "create_conda_env",
      "title": "Make a new conda environment",
      "topics": [
        "create_conda_env"
      ]
    },
    {
      "page": "create_virtual_env",
      "title": "Make a new virtual environment",
      "topics": [
        "create_virtual_env"
      ]
    },
    {
      "page": "find_python",
      "title": "Find Python versions, Conda, & Virtual Environments",
      "topics": [
        "find_python"
      ]
    },
    {
      "page": "GenerateEntryWiseFigures",
      "title": "Generate Entry Wise Figures",
      "topics": [
        "GenerateEntryWiseFigures"
      ]
    },
    {
      "page": "get_distributions_single",
      "title": "Get PDF distribution",
      "topics": [
        "get_distributions_single"
      ]
    },
    {
      "page": "ns_to_step",
      "title": "Num Switch Function to step function",
      "topics": [
        "ns_to_step"
      ]
    },
    {
      "page": "PreprocessMatrix",
      "title": "Preprocess Matrix",
      "topics": [
        "PreprocessMatrix"
      ]
    },
    {
      "page": "process_data",
      "title": "Convert data to R format if saved to disk",
      "topics": [
        "process_data"
      ]
    },
    {
      "page": "py_depend",
      "title": "Install Python Dependencies",
      "topics": [
        "py_depend"
      ]
    },
    {
      "page": "set_python_conda",
      "title": "Set Python Conda environment",
      "topics": [
        "set_python_conda"
      ]
    },
    {
      "page": "set_python_virtual",
      "title": "Set your Python Virtual environment",
      "topics": [
        "set_python_virtual"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "cpp11",
    "data.table",
    "farver",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "here",
    "isoband",
    "jsonlite",
    "labeling",
    "lattice",
    "lifecycle",
    "Matrix",
    "png",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppTOML",
    "reticulate",
    "rlang",
    "rprojroot",
    "S7",
    "scales",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "basic_tutorial.html.asis",
      "filename": "basic_tutorial.html",
      "title": "Basic Tutorial",
      "engine": "R.rsp::asis",
      "headings": [],
      "created": "2020-10-19 21:10:13",
      "modified": "2020-10-19 21:10:13",
      "commits": 1
    },
    {
      "source": "dependencies_tutorial.html.asis",
      "filename": "dependencies_tutorial.html",
      "title": "Set up",
      "engine": "R.rsp::asis",
      "headings": [],
      "created": "2020-10-19 21:10:13",
      "modified": "2020-10-19 21:10:13",
      "commits": 1
    }
  ],
  "_score": 2.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "presspurt",
  "_universes": [
    "rtxci",
    "dkoslicki"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-06-02T10:19:54.000Z",
      "distro": "noble",
      "commit": "f549fef186db27d9887caec4a4b20df1556073ee",
      "fileid": "bf0bb631c5731fa589bf8346757d8e105207ad69ff0aa4ca166a6b0b16be44c6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rtxci/actions/runs/26813257576"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-06-02T10:19:38.000Z",
      "distro": "noble",
      "commit": "f549fef186db27d9887caec4a4b20df1556073ee",
      "fileid": "1f1aaa6f8bb9ce85f3bdb249d3f41d18b6c1fb77bb368cee3809bd8682250590",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rtxci/actions/runs/26813257576"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-06-02T10:19:39.000Z",
      "commit": "f549fef186db27d9887caec4a4b20df1556073ee",
      "fileid": "8c568d6f158c9c20177d35a0ca1cd496010e38a6d89b48e9892a13d457feba87",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rtxci/actions/runs/26813257576"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-06-02T10:19:30.000Z",
      "commit": "f549fef186db27d9887caec4a4b20df1556073ee",
      "fileid": "a264d61d62b7815458d63e3e1673a5ed39822696f64f176ad466fe19fa1a1bfc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rtxci/actions/runs/26813257576"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.2",
      "date": "2026-06-02T10:19:52.000Z",
      "commit": "f549fef186db27d9887caec4a4b20df1556073ee",
      "fileid": "a5319955f95ac2c14d2d59b4beb3df95418f13d7377269dab3cdc7609841ac71",
      "status": "success",
      "buildurl": "https://github.com/r-universe/rtxci/actions/runs/26813257576"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-02T10:19:13.000Z",
      "commit": "f549fef186db27d9887caec4a4b20df1556073ee",
      "fileid": "bd6a5668ee6b00a35bde683a60269d1e361882b6cfb175daac471ad0574a70e1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rtxci/actions/runs/26813257576"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-02T10:18:55.000Z",
      "commit": "f549fef186db27d9887caec4a4b20df1556073ee",
      "fileid": "047f6be53d24c6931ea59191388a7ac98d03e92851df3a9067c752acfd9d3b85",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rtxci/actions/runs/26813257576"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-02T10:18:53.000Z",
      "commit": "f549fef186db27d9887caec4a4b20df1556073ee",
      "fileid": "e24bbe8a40ba6bceb563179b5591ec4d930d9c4a84f6126e8a84b1da4749a5fb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rtxci/actions/runs/26813257576"
    }
  ]
}